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k2cr2o7.sav
as follows:
VERZERR=rd7ff31 VAL[1]=k2cr2o7 Vmax=1.5 Vmin=0.1 PARAM[1]=EPS1 OUTPUTMASK=k2cr2o7-$ TITELMASK=k2cr2o7-teil-$ Minlattice=Cubic Maxlattice=TriclinicThen, you must call TEIL with the command
teil k2cr2o7at the DOS or WIN32 or OS/2 command screen prompt. It generates some lines of output on the sreen:
BGMN and related programs Copyright (C) J. Bergmann Dresden 1991-2002 BGMN is a registered trademark of J. Bergmann Version 3.4.8 This program may not be used after Mar 2003 RU=9 there were designed 26 partial angular rangesSignificantly, it adds a lot of lines to k2cr2o7.sav. This file now looks like
VERZERR=rd7ff31 VAL[1]=k2cr2o7 Vmax=1.5 Vmin=0.1 PARAM[1]=EPS1 OUTPUTMASK=k2cr2o7-$ TITELMASK=k2cr2o7-teil-$ Minlattice=Cubic Maxlattice=Triclinic %teil has computed the following angular ranges: Teil 1 WMIN[1]==1.0000000193910020E+001 WMIN2[1]==1.0000000000000000E+001 WMAX2[1]==1.3929930686950680E+001 WMAX[1]==1.4289999749257440E+001 VAL[1,1]=k2cr2o7 OUTPUT[1]=k2cr2o7-1 TITEL[1]=k2cr2o7-teil-1 % Teil 2 WMIN[2]==1.3569999890062170E+001 WMIN2[2]==1.3929930686950680E+001 WMAX2[2]==1.5714461326599120E+001 WMAX[2]==1.6659999299444910E+001 VAL[2,1]=k2cr2o7 OUTPUT[2]=k2cr2o7-2 TITEL[2]=k2cr2o7-teil-2 . . (etc) . % Teil 26 WMIN[26]==7.2820003746537340E+001 WMIN2[26]==7.5215393066406250E+001 WMAX2[26]==7.9000002704233040E+001 WMAX[26]==7.9000002704233040E+001 VAL[26,1]=k2cr2o7 OUTPUT[26]=k2cr2o7-26 TITEL[26]=k2cr2o7-teil-26 %these constants have been notated by TEIL for internal use VALZAHL==1.0000000000000000E+000 TEILZAHL==2.6000000000000000E+001In following, you must call EFLECH with the command line
eflech k2cr2o7It will generate the files
k2cr2o7-1.par
...k2cr2o7-26.par
, which
contain all peak parameters plus inverse curvature matrices. There will be
some output like
BGMN and related programs Copyright (C) J. Bergmann Dresden 1991-2002 BGMN is a registered trademark of J. Bergmann Version 3.4.8 This program may not be used after Mar 2003 using default value ABSCHNEID=2.500 computation with minimal error EPSILON=8.00E-002 (relative intensity error) Evaluation of 1th range with 144 measuring points unable to read peak parameter start values from file k2cr2o7-1.par starting iteration.............. Q=3336.49 using fast startup peak scanning N zweiTheta=13.4444 HWB=0.0462 Q=419.89 N zweiTheta=13.0061 HWB=0.0461 Q=130.37 terminating fast startup peak scanning . . (angular ranges 2...25) . Evaluation of 26th range with 207 measuring points unable to read peak parameter start values from file k2cr2o7-26.par starting iteration.............. Q=388.58 using fast startup peak scanning N zweiTheta=77.8572 HWB=0.0589 Q=247.15 terminating fast startup peak scanning closing iteration............... Q=247.15After this step, you may call INDEX with the command line
index k2cr2o7The results are given on the screen, it looks like
BGMN and related programs Copyright (C) J. Bergmann Dresden 1991-1998 BGMN is a registered trademark of J. Bergmann Version 3.4.8 This program may not be used after Mar 2003 Cubic *** using 43 pre-scan peaks, WMAX=55.28, ignore=2/7% +----+----+----+----+----+----+----+----+ Hexagonal *** using 43 pre-scan peaks, WMAX=55.28, ignore=1/5% +----+----+----+----+----+----+----+----+ Q V ignore A B C ALPHA BETA GAMMA 52.89% 1.368 P 1/ 0% 0.6933 0.6933 3.2870 90.000 90.000 120.000 Tetragonal *** using 43 pre-scan peaks, WMAX=55.28, ignore=1/5% +----+----+----+----+----+----+----+----+ Orthorhombic *** using 43 pre-scan peaks, WMAX=55.28, ignore=1/4% +----+----+----+----+----+----+----+----+ Q V ignore A B C ALPHA BETA GAMMA 71.22% 0.375 P 1/ 0% 0.1673 1.4623 1.5337 90.000 90.000 90.000 71.07% 0.379 P 1/ 0% 0.1689 1.4626 1.5341 90.000 90.000 90.000 71.01% 0.385 P 1/ 0% 0.1714 1.4626 1.5340 90.000 90.000 90.000 52.79% 0.804 A 1/ 0% 0.6598 0.8799 1.3843 90.000 90.000 90.000 50.69% 0.972 C 1/ 0% 0.6633 0.9829 1.4907 90.000 90.000 90.000 49.86% 1.202 B 1/ 0% 0.6212 0.7778 2.4871 90.000 90.000 90.000 44.26% 0.780 P 1/ 0% 0.3474 1.4641 1.5345 90.000 90.000 90.000 39.46% 1.619 B 1/ 0% 0.3598 1.5361 2.9286 90.000 90.000 90.000 37.18% 1.123 P 1/ 0% 0.5007 1.4627 1.5336 90.000 90.000 90.000 31.49% 1.363 P 1/ 0% 0.3919 1.3431 2.5888 90.000 90.000 90.000 Monoclinic *** using 27 pre-scan peaks, WMAX=39.24, ignore=0/0% +----+----+----+----+----+----+----+----+ Q V A B C ALPHA BETA GAMMA 21.90% 1.257 P 1.8917 0.2387 2.7854 90.000 92.304 90.000 20.33% 1.305 P 1.8923 0.2479 2.7853 90.000 92.309 90.000 Triclinic *** using 25 pre-scan peaks, WMAX=36.86, ignore=0/0% +----+----+----+----+----+----+----+----+ Q V A B C ALPHA BETA GAMMA 27.29% 0.470 P 0.5445 0.7404 1.2301 96.756 97.383 104.500 24.67% 0.647 P 0.6895 0.9653 1.0704 107.632 103.602 96.256 23.15% 0.658 P 0.5214 0.6994 1.8496 95.063 90.826 101.498 13.55% 0.727 P 0.7384 0.7469 1.3405 96.214 98.094 90.830 7.51% 1.454 P 0.7466 1.3406 1.4769 98.142 90.762 96.144As explained, INDEX selects the maximum ignore values using some advanced algorithms. Especially, these values depend on the maximum unit cell volumen as set in the control file (was 1.5 nm3 in this case). Large volumina hide INDEX from using other ignore values than zero. And the maximum ignore values depend from lattice symmetry. In this case, INDEX decides to use zero ignore values down from the monoclinic system.
In this case, the true solution is that of the last but one line
A=0.7384 B=0.7469 C=1.3405 ALPHA=96.214 BETA=98.094 GAMMA=90.830This may be confirmed by a LeBail-Fit using BGMN. The last line only doubles the unit cell. This gives an even better solution, in this case.
In complicated cases (large alignment errors makes classical indexing impossible), you may also use the entries
PARAM[1]=EPS1... PARAM[2]=EPS2...etc. for INDEX. INDEX will search for the best alignment correction while searching for best indexing. Of course, this complicates indexing. All
EPSx
are implemented, but no more than EPS1
(plus EPS2
for sufficient large upper angular limit) are
recommended.
For the final decision about truth of indexing, I recommend using BGMN in the LeBail mode: It will refine the line's position plus widths, the latter depending on some minor number real structure paramters.
Even the lattice base (P/A/B/C/I/F/R) as given by INDEX is a
recommendation, only. For example, for cassiterite (SnO2),
INDEX finds a body-centered base I. Looking at the structure,
it becomes clear: The heavy Sn atoms fullfill the special reflection condition
of body centering. Only the light O atoms contribute to the non-body-centered
reflection intensities, and by ignoring two reflections of only
one per cent summed (u-like) intensity INDEX decides for body-centering.
On the other hand, by chosing low ignore values, a non-primitve cell may be
marked as primitive for some spurious lines accidentally corresponding to
the primitve cell.
For particular, if there are strong different line widths, a LeBail refinement with B1=ANISO and/or k2=ANISO4 will give strong anisotropic results and a good fit only for the true index solution. Since level 3.4, the LeBail mode was much improved in computing time. Tt was fastened up by a factor above ten. So, patterns with 2500 lines and 10000 points may be LeBail-refined in some hours.