NOTES on THMA14C for PC distribution kit
Below are notes prepared by Ken Trueblood for THMA14. These have been edited
slightly and the distribution package includes test examples chosen for their
relevance to THMA14c and to the paper which recently appeared:
Schomaker & Trueblood, (1998) Acta Cryst.B54, 507-514
Please notify
E. F. Maverick
of any errors or difficulties.
- The program is supplied as a 32-bit executable for Windows
95/98/NT/ME/2000.This version requires that the run-time library
SALFLIBC.DLL is present in windows system directory, usually
c:\windows\system for Windows 95/98 or c:\winnt for Windows NT/2000. If you
have downloaded any other programs from this site you will already have this
library. If not you can get it here.
- The instructions are supplied in a separate file (MANUAL.TXT); they are
extensive. First come instructions for the simplified ("NEW") input, and
then the more detailed instructions for OLD input. There is a summary of
the OLD input instructions at the start. Most options will not be needed
by most users, but you will find it necessary to review the instructions
for the "OLD" input in order to understand some features of the simplified
input.
- Test examples are included in the PC-distribution. The command line
syntax for each job is given in the file TESTJOBS.TXT, which also gives a
brief description of each job-purpose.
- THMA14c is relatively new and many possible combinations of options have
not been tested. It doubtless still contains at least minor problems. Let
me (E.M.) know if you would like to be kept informed when we discover these.
THMA14c should be satisfactory for most applications, but this version
still does not do several things properly. In particular, when the molecule
has symmetry higher than 1-bar and an attached rigid group (ARG) is in a
general position, the values for the motion of that group may not always be
correct. All two-atom ARGs should lead to a singular, or nearly singular,
matrix when correlations of internal and overall motion are included
(the default with NEW input; for OLD input, ICORL non-negative).
- If you want to determine the mean-square torsional amplitude for a 1-atom
or 2-atom ARG ('attached rigid group'), you will find that unless the group
is on a site of special symmetry, it will only be done without correlations
of internal and overall motion, because a 1-atom or 2-atom ARG in a general
position leads to a singularity if one tries to include those correlations.
E. F. Maverick and L. J. Farrugia (May 3rd 1999)